POSTER
COMPREHENSIVE
ANALYSIS OF HUMAN ENDOGENOUS RETROVIRUS (HERV) TRANSCRIPTIONAL ACTIVITY IN
HUMAN TISSUES WITH A RETROVIRUS-SPECIFIC MICROARRAY
Oliver Frank,
Michelle Giehl, Chun Zheng, Ruediger Hehlmann, Christine Leib-Moesch and
Wolfgang Seifarth
Medizinische
Klinik III, Universitaetsklinikum Mannheim der Ruprecht-Karls-Universitaet
Heidelberg, Wiesbadener Str.7-11, D68305 Mannheim, Germany
We have developed a fast
and reliable high throughput method for the investigation of retroviral activity
in biological samples. The qualitative assay allows detection as well as
identification of most known retroviral reverse transcriptase-related nucleic
acids and combines multiplex polymerase chain reaction (PCR) using fluorochrome
(Cy3)-modified primer mixtures and glass DNA chip hybridization.
Employing the microarray
hybridization assay RNA samples derived from peripheral blood (n=6) and from
mammary gland specimen (n=6) were tested for RT-related transcript s(N=55)
representative for prominent HERV taxa of the human genome. Qualitative
evaluation of chip hybridization signals revealed distinct HERV activity
suggesting that HERVs are active in human cells in a tissue-specific manner.
Furthermore, 105 post
mortem brain tissue specimen of the Stanley array collection (3 groups with 35
specimens each derived from normals and individuals with schizophrenia and
bipolar disorders, respectively) have been tested. Evaluation of HERV
transcriptional activity profiles revealed that retroviral elements of class I
and II are active in prefrontal cortex in a tissue specific manner. Transcripts
of HERV-K-superfamily subgroups HML-2, HML-4, HML-6, HML-9, HML-10 as well as
class I retroviral transcripts of HERV-W, HERV-F, ERV9, and HERV-E taxa were
observed in all specimen. Comparison of HERV profiles obtained from SCZ,
bipolars and normal brain specimen revealed minor differences that could not be
linked to the disease status but seem to be characteristic for the genetic and
environmental background of the donor individual.
Interestingly, a MLV-related
sequence has been detected in 26% of all tested samples pointing to an
animal-born retrovirus associated with human brain. Further experiments are in
progress to elucidate origin and the putative role of this sequence for
neurological disorders.